Are you talking scuba diving throught the uiversity club, or the scientific diving program?.
If you are diving in connection with scientific diving program you must follow the diving manual of the university you are diving under. In that manual, as directed by the DSO of your program (i.e. the instructor you mentioned I am assuming), you must have your weight belt outside of any croch strap. This is not a debatable issue. If you think you want to do it your way you need to present your change in diving procedure to the Diving Control Board for your university for approval.
I agree with you there. This is in relation to diving outside the program on fun dives, but possibly with members from the program. I wouldn't challenge either the recreation or scientific diving program unless I thought their practices were unsafe.