Funny, isn't it? But +50% more perfusion is not excessively pessimistic for a strenous working dive in warm water. Looking at DCS incidents statistics, exertion at depth such as swimming against a current is a major contributing factor to "undeserved" hits, indicating that this problem is underestimated by many divers and some of these hits are actually well deserved ... Be aware that you have a potential major DCS risk factor here.
Practically, I can't tell how to best manage this. I wouldn't care about CNS exceeding 100%. Obviously, observe heart rate and breathing at depth, always move slowly. Maybe you want to keep two runtime tables in your wetnotes, and pick the extra conservative one when you feel that you had a lot of work to do?
A cheap underrated trick may be surface oxygen, i.e., back on the boat relax on the sofa breathing O2 preventively for like 30min right after a working dive that may or may not have you loaded with an unexpected high amount of inert gas, to get rid of it more quickly before it bites you. YMMV. Other ideas?