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You can always arrange the trip yourself!! There are plenty of suitable places to stay and to dive with in both Puerto Galera and Dumaguete.
If you select the accommodation carefully you shouldn't be very far from Atlantis especially in PG(no more than couple of min walk eg. Asia Divers).
---------- Post added July 2nd, 2014 at 03:59 PM ----------
Air Bus 319/320 can take at least 180 but you are corrected if the plane is ATR 72-500.
I don't want to be a party crasher, but the place I'm going to stay at in my 2015 recon visit is like 200 yards from Atlantis... nothing to brag about, but a clean place with somewhere to sleep and eat when I'm not diving... I don't need any fluff.