Is it really a backup if you're having to decide which one to use?
The way I see it is you'd use your primary and only your primary, unless your primary dies then you use your backup. Sure the algorithms may not be the exact same, and moving to your backup may make you more conservative or liberal, but as long as you trust both, I don't see this as a big deal.
When my current computer becomes a backup, I make sure the batteries are charged and the settings are right for the dive (Nitrox, salt water, etc.), stick it in my BCD pocket, and forget about it unless I need it.