It's fairly important to remember that when it comes to decompression theory, it's a guessing game. The Navy did the complete tests to develop the tables in the fifties; DSAT did complete tests to develop the RDP in the eighties; but they are based on models that are only verified by those tests.
In other words someone made a guess of how it would turn out, and then they bent a bunch of people to make corrections to their guesses. If the theory worked, they would not need the tests, and they would not have bent anyone during the tests. The theory is only verified by the tests on human subjects. Outside of the military and commercial diving, which just has no need for repetitive dives, and more important use chamber decompression as a matter of course, we are just no longer going to get anymore basic research done. We recreational divers are the only guinea pigs.
There are educated guesses about what model to use, but the fact is that randomly people get bent on dives that quite simply cannot (by theory) cause DCS (and conversely don't get bent on dives where they should). We treated a Japanese intro diver for DCS at the HTC in Hawaii who did one 20 minute dive to thirty feet, who did not go to altitude afterwards.
Yes, yes, there is absolutely no way she could have gotten bent on a twenty minute dive to thirty feet. And yet, she was. Until a model can explain the absolute the outliers in some other way than just saying "**** happens", deco theory should be thought of as very much a work in progress, and not a field in which definitive answers will be found. There are recommendations, which whether originally justified or not, become justifiable by being followed by many divers who complete dives following that recommendation without incident.
In other words, since tables are empirical, not theoretical, historically followed practices can become justified simply because people have followed them and been safe. There need not have been any original cogent rationale for the "Deep dives first" protocol for it to have become a reasonable recommendation now. Now the only rationale needed is the fact that it has been standard practice in an industry which has proven itself safe. Now, in order to reasonably rescind the "Dive Deep First" recommendation with any degree of justification would require the sort of testing which will never be done again.
So one can say it's original rationale was missing, but one cannot say continuing that recommendation now is inappropriate.